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Read more:
How to install cygwin
How to add packages after install Cygwin

Installation:

apt-cyg install autoconf

cygwin install autoconf

Result:

$ apt-cyg install autoconf
Installing autoconf
--2016-08-20 21:40:43--  http://cygwin.mirror.constant.com//noarch/release/autoconf/autoconf-13-1.tar.bz2
Resolving cygwin.mirror.constant.com (cygwin.mirror.constant.com)... 108.61.5.83
Connecting to cygwin.mirror.constant.com (cygwin.mirror.constant.com)|108.61.5.83|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 3388 (3,3K) [application/octet-stream]
Saving to: ‘autoconf-13-1.tar.bz2’

autoconf-13-1.tar.b 100%[===================>]   3,31K  --.-KB/s    in 0s

2016-08-20 21:40:45 (23,0 MB/s) - ‘autoconf-13-1.tar.bz2’ saved [3388/3388]

autoconf-13-1.tar.bz2: OK
Unpacking...
Package autoconf requires the following packages, installing:
autoconf2.1 autoconf2.5 bash sed
Installing autoconf2.1
--2016-08-20 21:40:45--  http://cygwin.mirror.constant.com//noarch/release/autoconf2.1/autoconf2.1-2.13-12.tar.bz2
Resolving cygwin.mirror.constant.com (cygwin.mirror.constant.com)... 108.61.5.83
Connecting to cygwin.mirror.constant.com (cygwin.mirror.constant.com)|108.61.5.83|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 204911 (200K) [application/octet-stream]
Saving to: ‘autoconf2.1-2.13-12.tar.bz2’

autoconf2.1-2.13-12 100%[===================>] 200,11K  46,7KB/s    in 4,3s

2016-08-20 21:40:50 (46,7 KB/s) - ‘autoconf2.1-2.13-12.tar.bz2’ saved [204911/204911]

autoconf2.1-2.13-12.tar.bz2: OK
Unpacking...
Package autoconf2.1 requires the following packages, installing:
bash coreutils info m4 perl
Package bash is already installed, skipping
Package coreutils is already installed, skipping
Package info is already installed, skipping
Installing m4
--2016-08-20 21:40:51--  http://cygwin.mirror.constant.com//x86_64/release/m4/m4-1.4.17-2.tar.xz
Resolving cygwin.mirror.constant.com (cygwin.mirror.constant.com)... 108.61.5.83
Connecting to cygwin.mirror.constant.com (cygwin.mirror.constant.com)|108.61.5.83|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 275592 (269K) [application/octet-stream]
Saving to: ‘m4-1.4.17-2.tar.xz’

m4-1.4.17-2.tar.xz  100%[===================>] 269,13K  62,5KB/s    in 4,3s

2016-08-20 21:40:56 (62,5 KB/s) - ‘m4-1.4.17-2.tar.xz’ saved [275592/275592]

m4-1.4.17-2.tar.xz: OK
Unpacking...
Package m4 requires the following packages, installing:
cygwin libsigsegv2
Package cygwin is already installed, skipping
Package libsigsegv2 is already installed, skipping
Installing perl
--2016-08-20 21:40:57--  http://cygwin.mirror.constant.com//x86_64/release/perl/perl-5.22.2-1.tar.xz
Resolving cygwin.mirror.constant.com (cygwin.mirror.constant.com)... 108.61.5.83
Connecting to cygwin.mirror.constant.com (cygwin.mirror.constant.com)|108.61.5.83|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 3531600 (3,4M) [application/octet-stream]
Saving to: ‘perl-5.22.2-1.tar.xz’

perl-5.22.2-1.tar.x 100%[===================>]   3,37M  83,2KB/s    in 92s

2016-08-20 21:42:29 (37,5 KB/s) - ‘perl-5.22.2-1.tar.xz’ saved [3531600/3531600]

perl-5.22.2-1.tar.xz: OK
Unpacking...
Package perl requires the following packages, installing:
cygwin libcrypt0 libdb5.3 libgdbm4 libssp0 perl_autorebase perl_base
Package cygwin is already installed, skipping
Package libcrypt0 is already installed, skipping
Package libdb5.3 is already installed, skipping
Package libgdbm4 is already installed, skipping
Package libssp0 is already installed, skipping
Installing perl_autorebase
--2016-08-20 21:42:33--  http://cygwin.mirror.constant.com//x86_64/release/perl/perl_autorebase/perl_autorebase-5.22.2-1.tar.xz
Resolving cygwin.mirror.constant.com (cygwin.mirror.constant.com)... 108.61.5.83
Connecting to cygwin.mirror.constant.com (cygwin.mirror.constant.com)|108.61.5.83|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 264 [application/octet-stream]
Saving to: ‘perl_autorebase-5.22.2-1.tar.xz’

perl_autorebase-5.2 100%[===================>]     264  --.-KB/s    in 0s

2016-08-20 21:42:33 (1,35 MB/s) - ‘perl_autorebase-5.22.2-1.tar.xz’ saved [264/264]

perl_autorebase-5.22.2-1.tar.xz: OK
Unpacking...
Installing perl_base
--2016-08-20 21:42:34--  http://cygwin.mirror.constant.com//x86_64/release/perl/perl_base/perl_base-5.22.2-1.tar.xz
Resolving cygwin.mirror.constant.com (cygwin.mirror.constant.com)... 108.61.5.83
Connecting to cygwin.mirror.constant.com (cygwin.mirror.constant.com)|108.61.5.83|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 2945432 (2,8M) [application/octet-stream]
Saving to: ‘perl_base-5.22.2-1.tar.xz’

perl_base-5.22.2-1. 100%[===================>]   2,81M  25,7KB/s    in 68s

2016-08-20 21:43:42 (42,3 KB/s) - ‘perl_base-5.22.2-1.tar.xz’ saved [2945432/2945432]

perl_base-5.22.2-1.tar.xz: OK
Unpacking...
Package perl_base requires the following packages, installing:
cygwin libcrypt0 libssp0
Package cygwin is already installed, skipping
Package libcrypt0 is already installed, skipping
Package libssp0 is already installed, skipping
Installing autoconf2.5
--2016-08-20 21:43:52--  http://cygwin.mirror.constant.com//noarch/release/autoconf2.5/autoconf2.5-2.69-3.tar.xz
Resolving cygwin.mirror.constant.com (cygwin.mirror.constant.com)... 108.61.5.83
Connecting to cygwin.mirror.constant.com (cygwin.mirror.constant.com)|108.61.5.83|:80... connected.
HTTP request sent, awaiting response... 200 OK
Length: 720716 (704K) [application/octet-stream]
Saving to: ‘autoconf2.5-2.69-3.tar.xz’

autoconf2.5-2.69-3. 100%[===================>] 703,82K  43,6KB/s    in 26s

2016-08-20 21:44:19 (26,8 KB/s) - ‘autoconf2.5-2.69-3.tar.xz’ saved [720716/720716]

autoconf2.5-2.69-3.tar.xz: OK
Unpacking...
Package autoconf2.5 requires the following packages, installing:
bash m4 perl
Package bash is already installed, skipping
Package m4 is already installed, skipping
Package perl is already installed, skipping
Package bash is already installed, skipping
Package sed is already installed, skipping
Running /etc/postinstall/autoconf.sh
Package autoconf installed

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